I have two points in this reply, since I don't think your problem is with interior versus exterior bean temperature. So I'll cover that first, and what I think went wrong second.
You can measure the exterior temperature of the bean by measuring the temperature of the air around the beans, In a drum roast this means a probe stuck in the bean mass, in an air or convection roaster it means a probe measuring the air as it departs from the bean mass. You cannot measure the interior bean temperature; but it has been measured in labs. It runs around 5 to 10F lower in slow roasts, around 10 to 20F in fast roasts. The slow profile of the Gene makes this a non-problem.
You went wrong by lowering the environmental temperature during the roast. This happens automatically in a lot of home and self-built roasters with poor on/off temperature controls, but you've been doing it deliberately. It is one of the major roast control errors.
When the temperature around the beans falls, the amino acids and sugars at the surface of the bean, that have developed earlier in the roast by the breakdown of starches and proteins, repolymerize. Starchs and proteins have no taste and no aroma, while sugars, amino acids and other small compounds do. So when the temperature drops in the roaster, the coffee flavors die.
Moreover, if you drop the environmental temperature at just the right time, from half way through the 1st crack to just after its end, then you will end up with ugly as well as flat tasting beans. At this stage of the roast, the beans are in their "glass phase," that is their skin is expanding smoothly. The temperature drop is like dropping a hot glass into cold water. The beans stay small, and show cracks, wrinkles and mottling.
These problems are covered up in roasts that go into the 2nd crack or beyond, since the breakdown of the cellulose then expands the beans some more. Moreover, until the end of the 2nd crack, some remaining polymers break down into roasty tasting smaller compounds. So the only remaining hint at what went wrong is that instead of a little fruit and acidity to go with the roast flavors, there'll be none at all.
I think some people get misled by larger drum roasters or unventilated sample roasters needing to cut the heat source at around the first crack. This is not to reduce the temperature inside the drum, but to prevent it from overheating. There is already so much heat stored in them, and so little opportunity for it to escape, that the drum temperature continues rising even when the heat source is off. This is never true for a convection roaster like the Gene, or even most well ventilated drums.
In summary: love the one you're with -- it's better to operate the roaster you actually have than the imaginary Probat you really desire
