I can't answer your question directly, hopefully someone can, but I can suggest an alternative:
If you happen to have MATLAB on your computer you can use it to read the data from the thermometer directly, bypassing the Omega software altogether. Here's some sample MATLAB code that reads the temperatures and plots them on the fly, as it happens:
s = serial('COM1','Terminator',char(13));
fopen(s)
t0 = tic;
for i=1:56,
data = fscanf(s);
T(i,:) = [sscanf(data(12:15),'%d'), sscanf(data( 8:11),'%d')]/10;
t(i) = toc(t0); plot(t-t(1),T,'o-'); xlabel('TIME (seconds)');
ylabel('TEMPERATURE (F)'); legend('T_1','T_2'); drawnow;
end;
fclose(s)
Here's the resulting output:

I am sure this could be done with other software packages too, MATLAB is just the one I am used to.
John