There is usually a difference, thought that's certainly a very big difference. Are the original baskets for your machine and is the pattern and type of hole in the bottom of the basket the same?
If they are, I don't imagine there's much you can do about it. You could certainly try cleaning your baskets thoroughly by for example soaking them in Cafizza. It could be that one has become significantly more clogged over time because you use it more than the other. That's certainly worth trying.
How much you will need to adjust depends on lots of things, including your machine and the beans you are grinding. Often there's very little need to adjust, but certainly not always. If you go into many (good) bars and ask for a single you are quite likely to find they prepare a double and just let one of the spouts drain into the drip try while the other fills your cup.
If all else fails (the baskets have an identical pattern, soaking in Cafizza makes no difference, changing to baskets that fit made by another company has no effect) you could always do that..... or buy a second grinder....

if you don't like dumping the purge shots between settings ..... Price-wise it might all work out the same in the end, depending on how much your drink.....
Cheers
Mike
LMWDP No. 237