If the new HotTop uses the same back of chamber sensor, then the profiles will be based on an offset, rather than the bean mass temp. The current temperatres read vary as much as 70F from the bean mass probe and 170F from the environmental temperature. If the sensor is insulated from the chamber wall, it might be more accurate.
The user will still need a bean mass temperature probe to verify the set profile is actually impressed on the beans.
Randy Glass has a page on inserting a TC in the bean mass that works quite well.
http://home.surewest.net/frcn/Coffee/HowToHottopTemp.html
Split wiring the HotTop gives 100% control of the roast profile.
http://www.ielogical.com/coffee/HTManualMods.rtf has rudimentary instructions for the adventurous.
I added an environmental temperature probe for information on what happens with fan control. I also added an external power supply to increase the volume of air moved by about 50%. When used in conjunction with the variac to reduce input power, it can have a useful effect. The HotTop holds a lot of heat and there is not much opening for air flow. Open chaffe tray about 1/8" after 1st to increase air flow.